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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75681298_75687077_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75681298 - 75687077
Intron Length:
5780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ATTCTCCTAACC
Flanking Amino Acid:
QDPDAAKNPVKYSVDRHTDM
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
83
0.74
0.8
77.1
36.1
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
63.4
0.4
1.7
75.04
34.6

Associated Gene:

Gene:
CDH6
Ensembl Gene ID:
ENSAPLG00000005708
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022926
75669204 - 75724036
54833
ENSAPLT00000005960
75671287 - 75770008
98722