Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75692722_75694257_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

75692722 - 75694257

Intron Length:

1536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAGGTGCT

5'SS Class:

major

3'SS Sequence:

TTTATCATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

TTTTGTTTAATT

Flanking Amino Acid:

NASIPEMSDVGTFVVQVTAT

Intron Amino Acid Position:

175

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

71.5

38.5

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

84.1

0.77

0.8

78.3

34.6

Minor 5ss

34.1

-1.8

3.5

46.6

44.1

Minor BPS

74.8

0.86

1.7

91.31

32.6

Associated Gene:

Gene:

CDH6

Ensembl Gene ID:

ENSAPLG00000005708

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005960

75671287 - 75770008

98722

ENSAPLT00000022926

75669204 - 75724036

54833