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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75795674_75801672_F

Intron Information:

Intron Rank:
139681
Intron Class:
major
Intron Phase:
Intron Coordinates:
75795674 - 75801672
Intron Length:
5999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATCCTTTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
85.1
0.79
0.7
77.1
31.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
44
-0.3
1.7
59.56
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025084
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029424
75794929 - 75802048
7120
ENSAPLT00000019093
75785481 - 75802048
16568