About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75841983_75844878_F

Intron Information:

Intron Rank:
141125
Intron Class:
major
Intron Phase:
Intron Coordinates:
75841983 - 75844878
Intron Length:
2896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
90.5
0.91
0.7
85.9
26.9
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026005
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030496
75840963 - 75845181
4219