Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75853244_75872569_F

Intron Information:

Intron Rank:

135342

Intron Class:

major

Intron Phase:

Intron Coordinates:

75853244 - 75872569

Intron Length:

19326

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGCAT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

71.3

40.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.5

0.87

0.7

88.2

29.1

Minor 5ss

38.5

-1.3

3.4

55.3

48.9

Minor BPS

64.4

0.53

1.7

84.57

36.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022806

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040786

75853021 - 75874277

21257