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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75924220_75931989_R

Intron Information:

Intron Rank:
149640
Intron Class:
major
Intron Phase:
Intron Coordinates:
75924220 - 75931989
Intron Length:
7770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
CCACATAAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
35.6
-1.2
1.7
30.85
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028036
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020700
75922002 - 75932822
10821