Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76334127_76379051_R

Intron Information:

Intron Rank:

148926

Intron Class:

major

Intron Phase:

Intron Coordinates:

76334127 - 76379051

Intron Length:

44925

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGATAG

5'SS Class:

strong_major

3'SS Sequence:

GTGTTTTCTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCAAA

U12 Branch Point Sequence:

ACTTCCAAAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

68.6

39.1

Major BPS

62.7

0.32

1.2

33.2

Major PPT

70.2

0.45

1.1

68.2

42.6

Minor 5ss

35.9

-1.6

3.3

46.1

49.1

Minor BPS

59.2

0.37

79.27

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027567

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041861

76334017 - 76382513

48497