About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76378610_76379051_R

Intron Information:

Intron Rank:
148923
Intron Class:
major
Intron Phase:
Intron Coordinates:
76378610 - 76379051
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAATTGTGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.6
39.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
80.3
0.68
0.8
76.3
31.2
Minor 5ss
35.9
-1.6
3.3
46.1
49.1
Minor BPS
49.6
-0
2.1
65.14
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027567
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019900
76378247 - 76382513
4267