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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76395528_76400503_F

Intron Information:

Intron Rank:
127427
Intron Class:
major
Intron Phase:
Intron Coordinates:
76395528 - 76400503
Intron Length:
4976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TCTCTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
79.6
0.67
0.8
77.4
29.7
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
52.5
0.16
1.8
73.23
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018712
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039383
76393516 - 76400524
7009