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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76452861_76461199_R

Intron Information:

Intron Rank:
134917
Intron Class:
major
Intron Phase:
Intron Coordinates:
76452861 - 76461199
Intron Length:
8339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGAGTTA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACTTTTATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.1
61.7
39.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.7
0.73
1
79.9
37.7
Minor 5ss
38.4
-1.3
3.7
51.6
47.5
Minor BPS
63.4
0.5
1.6
78.49
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032654
76440210 - 76461325
21116