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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76488889_76489772_R

Intron Information:

Intron Rank:
150247
Intron Class:
major
Intron Phase:
Intron Coordinates:
76488889 - 76489772
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTAAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.3
0.43
0.9
68.2
36.7
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
72.6
0.79
1.6
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038275
76487853 - 76494351
6499