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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76489831_76490750_R

Intron Information:

Intron Rank:
150244
Intron Class:
major
Intron Phase:
Intron Coordinates:
76489831 - 76490750
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGGGAG
5'SS Class:
major
3'SS Sequence:
GTTTTCTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATATATTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
57.7
41.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
81.8
0.72
0.8
74.4
36.5
Minor 5ss
28.9
-2.4
3.7
36.5
42.4
Minor BPS
48.9
-0
1.9
69.26
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020538
76485009 - 76490850
5842