About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76489831_76493114_R

Intron Information:

Intron Rank:
150248
Intron Class:
major
Intron Phase:
Intron Coordinates:
76489831 - 76493114
Intron Length:
3284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATATATTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
79
0.72
1
78.4
31.2
Major PPT
81.8
0.72
0.8
74.4
36.5
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
48.9
-0
1.9
69.26
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038275
76487853 - 76494351
6499