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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76495909_76497867_R

Intron Information:

Intron Rank:
150246
Intron Class:
major
Intron Phase:
Intron Coordinates:
76495909 - 76497867
Intron Length:
1959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTGCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.3
34.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69
0.43
1
65.2
40.7
Minor 5ss
28.3
-2.5
3.1
31.3
36.7
Minor BPS
57.7
0.24
1.9
72.88
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028422
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021768
76494042 - 76497931
3890