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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76521330_76525276_R

Intron Information:

Intron Rank:
155045
Intron Class:
major
Intron Phase:
Intron Coordinates:
76521330 - 76525276
Intron Length:
3947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTTTTCTGATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
68
0.45
1
57.8
39
Major PPT
76.2
0.59
0.9
73.7
36.4
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
51.8
-0
1.9
65.3
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030915
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038258
76520885 - 76562620
41736