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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7655079_7693970_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7655079 - 7693970
Intron Length:
38892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTGATATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTCCTTTGATA
Flanking Amino Acid:
ALYNCDARSQELVGSNPPQR
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.9
0.56
0.9
66.8
44
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
73.2
0.72
1.1
79.54
29.6

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020204
7654974 - 7862491
207518