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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76562742_76587564_R

Intron Information:

Intron Rank:
152480
Intron Class:
major
Intron Phase:
Intron Coordinates:
76562742 - 76587564
Intron Length:
24823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
77.7
33.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
83.7
0.76
0.9
85.8
26
Minor 5ss
35.9
-1.6
2.6
42.5
44.2
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029616
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031015
76562641 - 76643022
80382