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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76587631_76625952_R

Intron Information:

Intron Rank:
152473
Intron Class:
major
Intron Phase:
Intron Coordinates:
76587631 - 76625952
Intron Length:
38322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCACA
5'SS Class:
major
3'SS Sequence:
TTGTTTGGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTATACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67.6
39.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.9
0.51
1
69.5
41.6
Minor 5ss
32.8
-2
3.1
40.2
45.7
Minor BPS
49.3
0.03
1.9
71.4
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029616
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020111
76575753 - 76651856
76104
ENSAPLT00000037434
76575753 - 76642295
66543
ENSAPLT00000031015
76562641 - 76643022
80382
ENSAPLT00000027702
76580635 - 76643022
62388