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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76620165_76625952_R

Intron Information:

Intron Rank:
152487
Intron Class:
major
Intron Phase:
Intron Coordinates:
76620165 - 76625952
Intron Length:
5788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCACA
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTGTCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67.6
39.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
32.8
-2
3.1
40.2
45.7
Minor BPS
58.1
0.34
1.7
74.69
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029616
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044616
76618743 - 76642295
23553