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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76627015_76641687_R

Intron Information:

Intron Rank:
152486
Intron Class:
major
Intron Phase:
Intron Coordinates:
76627015 - 76641687
Intron Length:
14673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTCTGAGAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
80.1
0.68
0.8
73.1
37.3
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
40
-0.7
2.6
58.82
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029616
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037434
76575753 - 76642295
66543