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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76673065_76675883_R

Intron Information:

Intron Rank:
153599
Intron Class:
major
Intron Phase:
Intron Coordinates:
76673065 - 76675883
Intron Length:
2819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGAC
5'SS Class:
major
3'SS Sequence:
CCTTACTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTCCTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.4
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.7
0.47
0.9
64.7
35.2
Minor 5ss
29.1
-2.4
3.5
32.4
42.7
Minor BPS
74.1
0.75
1.5
81.61
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030116
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037819
76672829 - 76676394
3566