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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76676069_76676409_R

Intron Information:

Intron Rank:
153602
Intron Class:
major_hybrid
Intron Phase:
Intron Coordinates:
76676069 - 76676409
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTGACAAAG|T
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
49.7
-0
1.2
48.6
42.9
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
71.2
0.53
1.3
70.08
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030116
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045501
76669219 - 76676506
7288