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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76705521_76707994_R

Intron Information:

Intron Rank:
145663
Intron Class:
major
Intron Phase:
Intron Coordinates:
76705521 - 76707994
Intron Length:
2474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTCCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.8
0.83
0.8
81.4
35.2
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
73
0.72
1.5
80.17
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025752
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043110
76704933 - 76708077
3145