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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76705521_76901688_R

Intron Information:

Intron Rank:
145661
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
76705521 - 76901688
Intron Length:
196168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGCCAAC
5'SS Class:
weak_major
3'SS Sequence:
TTTGTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTCCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.8
0.11
1.4
55.3
43.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.8
0.83
0.8
81.4
35.2
Minor 5ss
40.2
-1.1
3
51.9
45
Minor BPS
73
0.72
1.5
80.17
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025752
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025904
76704933 - 76901937
197005