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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76796434_76798811_F

Intron Information:

Intron Rank:
144979
Intron Class:
major
Intron Phase:
Intron Coordinates:
76796434 - 76798811
Intron Length:
2378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGTAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.3
39.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.2
0.59
0.9
67.7
42.6
Minor 5ss
42.2
-0.9
3.1
54.5
49.7
Minor BPS
65
0.55
1.6
77.4
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028172
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047110
76796085 - 76802735
6651