About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76798970_76802443_F

Intron Information:

Intron Rank:
144977
Intron Class:
major
Intron Phase:
Intron Coordinates:
76798970 - 76802443
Intron Length:
3474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTCTCCTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
68
0.64
1.8
84.75
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028172
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047110
76796085 - 76802735
6651
ENSAPLT00000031259
76798812 - 76811566
12755