Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76803186_76809245_F

Intron Information:

Intron Rank:

144978

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

76803186 - 76809245

Intron Length:

6060

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGACC

5'SS Class:

strong_major

3'SS Sequence:

TCAAACCATAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TATTTTCAAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

75.6

33.8

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

51.4

0.03

1.1

49.3

38.2

Minor 5ss

28.1

-2.5

34.6

41.4

Minor BPS

49.9

-0

1.9

67.47

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028172

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031259

76798812 - 76811566

12755