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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76813042_76813769_R

Intron Information:

Intron Rank:
129056
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
76813042 - 76813769
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTTA
5'SS Class:
weak_major
3'SS Sequence:
TTCTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
76.7
34.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.6
0.85
0.8
84
30
Minor 5ss
68.9
0.64
1.8
75.8
40.1
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016579
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034512
76812634 - 76817596
4963