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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_76813845_76816647_R

Intron Information:

Intron Rank:
129057
Intron Class:
major
Intron Phase:
Intron Coordinates:
76813845 - 76816647
Intron Length:
2803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCACCACA
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
CCTAACTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.5
62.5
43.9
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
86
0.81
0.7
85.1
29.7
Minor 5ss
40.6
-1
2.7
50.7
45.2
Minor BPS
63
0.39
1.6
68.02
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016579
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034512
76812634 - 76817596
4963