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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7694086_7702179_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7694086 - 7702179
Intron Length:
8094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATA
5'SS Class:
strong_major
3'SS Sequence:
GTATGCTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTATGCTTCACA
Flanking Amino Acid:
IVTSVILLTPVEDNSLSQKK
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
81.6
31.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
71.9
0.49
1
64.8
41.2
Minor 5ss
45.5
-0.5
2.5
60.1
44.4
Minor BPS
53.3
0.1
2.2
68.94
43.2

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032881
7613822 - 7708188
94367
ENSAPLT00000022795
7613822 - 7862491
248670
ENSAPLT00000020204
7654974 - 7862491
207518
ENSAPLT00000008356
7549629 - 7862491
312863