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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7702279_7708099_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7702279 - 7708099
Intron Length:
5821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
IHDPEAKWITDYILYCQGRR
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.3
0.59
0.9
75.1
33.9
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032881
7613822 - 7708188
94367