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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7702279_7725489_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7702279 - 7725489
Intron Length:
23211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACTTCTTTAATG
Flanking Amino Acid:
IHDPEAKWITDNEFIYRNQN
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85.9
0.81
0.7
80.7
24.6
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
73
0.58
1.3
69.15
39.1

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022795
7613822 - 7862491
248670
ENSAPLT00000020204
7654974 - 7862491
207518
ENSAPLT00000008356
7549629 - 7862491
312863