About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77115168_77158026_R

Intron Information:

Intron Rank:
138657
Intron Class:
major
Intron Phase:
Intron Coordinates:
77115168 - 77158026
Intron Length:
42859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
GTTGACAAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
71.7
0.49
1
72.5
37.7
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
43.5
-0.5
2.1
56.87
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022101
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048137
77114133 - 77158649
44517