About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_771178_772170_R

Intron Information:

Intron Rank:
138282
Intron Class:
major
Intron Phase:
Intron Coordinates:
771178 - 772170
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.8
0.85
0.7
83.5
31.6
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
63.6
0.42
1.7
75.16
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021497
771100 - 777560
6461