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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77155231_77157139_R

Intron Information:

Intron Rank:
138655
Intron Class:
major
Intron Phase:
Intron Coordinates:
77155231 - 77157139
Intron Length:
1909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TATTCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
80.9
0.7
0.8
73.4
36.1
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
76.3
0.91
1.5
89.12
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022101
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030158
77155130 - 77158649
3520