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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77156130_77157139_R

Intron Information:

Intron Rank:
138653
Intron Class:
major
Intron Phase:
Intron Coordinates:
77156130 - 77157139
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.8
78.3
39.6
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
61.2
0.35
2
79.1
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022101
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022978
77156048 - 77158649
2602