About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77157266_77158026_R

Intron Information:

Intron Rank:
138654
Intron Class:
major
Intron Phase:
Intron Coordinates:
77157266 - 77158026
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATTCCATCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATTCCATCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
79.4
0.73
1
80.1
32
Major PPT
77.4
0.62
0.9
70
34.8
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
47.2
-0.2
2.1
65.37
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022101
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030158
77155130 - 77158649
3520
ENSAPLT00000022978
77156048 - 77158649
2602