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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7728704_7748007_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7728704 - 7748007
Intron Length:
19304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTTCTTAATT
Flanking Amino Acid:
YALFAFNVEPVYQHSYTAYY
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
84.3
1.15
0.9
92.31
29.9

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022795
7613822 - 7862491
248670
ENSAPLT00000020204
7654974 - 7862491
207518
ENSAPLT00000008356
7549629 - 7862491
312863