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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77329450_77348992_R

Intron Information:

Intron Rank:
141015
Intron Class:
major
Intron Phase:
Intron Coordinates:
77329450 - 77348992
Intron Length:
19543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTATTTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.9
0.65
0.8
74
35.3
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
50.5
0.01
1.5
62.86
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023190
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047714
77328815 - 77355178
26364