Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77349075_77351328_R

Intron Information:

Intron Rank:

141016

Intron Class:

major

Intron Phase:

Intron Coordinates:

77349075 - 77351328

Intron Length:

2254

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTAAT

5'SS Class:

major

3'SS Sequence:

TTTCTAATTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CTCTTTCTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

81.8

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

0.67

0.8

75.2

33.4

Minor 5ss

-1.1

2.9

57.3

41.2

Minor BPS

55.4

0.25

1.7

71.16

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023190

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047714

77328815 - 77355178

26364