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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77376253_77383562_R

Intron Information:

Intron Rank:
141105
Intron Class:
major
Intron Phase:
Intron Coordinates:
77376253 - 77383562
Intron Length:
7310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCCT
5'SS Class:
major
3'SS Sequence:
TTTTCTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTTTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
70.4
39.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
91.1
0.92
0.7
89.6
25.2
Minor 5ss
42.3
-0.9
2.9
59.8
44.7
Minor BPS
49.5
0.05
1.9
72.55
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023250
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030036
77373351 - 77383755
10405