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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77393881_77398876_R

Intron Information:

Intron Rank:
135837
Intron Class:
major
Intron Phase:
Intron Coordinates:
77393881 - 77398876
Intron Length:
4996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTCCTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
91.7
1.29
0.8
92.06
26.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020485
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028325
77392040 - 77404373
12334