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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77398960_77402174_R

Intron Information:

Intron Rank:
135838
Intron Class:
major
Intron Phase:
Intron Coordinates:
77398960 - 77402174
Intron Length:
3215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AAATTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TACTAAATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
72.1
0.5
0.9
65.8
39.9
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
49.2
0.02
2
72.89
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020485
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036859
77398665 - 77435508
36844
ENSAPLT00000028325
77392040 - 77404373
12334