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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77402306_77404249_R

Intron Information:

Intron Rank:
135839
Intron Class:
major
Intron Phase:
Intron Coordinates:
77402306 - 77404249
Intron Length:
1944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
CTCTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATTTCCCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71
34.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
91.1
0.92
0.6
86.6
24.4
Minor 5ss
35
-1.7
3
46.1
42.9
Minor BPS
65.5
0.56
1.9
87.52
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020485
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028325
77392040 - 77404373
12334