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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_7748061_7762655_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7748061 - 7762655
Intron Length:
14595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATTCCTGAAGG
Flanking Amino Acid:
AYYVLSKIPHGDPQNLYPPE
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
77.9
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
40.6
-1
2.9
49.4
46.6
Minor BPS
55.9
0.05
1.9
61.45
46

Associated Gene:

Gene:
DPP6
Ensembl Gene ID:
ENSAPLG00000008020
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020204
7654974 - 7862491
207518
ENSAPLT00000008356
7549629 - 7862491
312863
ENSAPLT00000022795
7613822 - 7862491
248670