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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77541215_77544087_R

Intron Information:

Intron Rank:
137675
Intron Class:
major
Intron Phase:
Intron Coordinates:
77541215 - 77544087
Intron Length:
2873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTATGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
31.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
81.1
0.7
0.9
77.5
41
Minor 5ss
32.2
-2
3.5
47.2
48.2
Minor BPS
71.4
0.75
1.4
84.15
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021571
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023758
77528764 - 77546916
18153