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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77541215_77546638_R

Intron Information:

Intron Rank:
137678
Intron Class:
major
Intron Phase:
Intron Coordinates:
77541215 - 77546638
Intron Length:
5424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTATGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
81.1
0.7
0.9
77.5
41
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
71.4
0.75
1.4
84.15
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021571
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029769
77528764 - 77546916
18153
ENSAPLT00000024115
77508371 - 77546916
38546