About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77544229_77546638_R

Intron Information:

Intron Rank:
137676
Intron Class:
major
Intron Phase:
Intron Coordinates:
77544229 - 77546638
Intron Length:
2410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTCTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTTTGGTCATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
70.5
0.46
1
69
37
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
40.8
-0.6
2.7
69.3
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021571
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023758
77528764 - 77546916
18153