Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77565157_77566625_R

Intron Information:

Intron Rank:

133451

Intron Class:

major

Intron Phase:

Intron Coordinates:

77565157 - 77566625

Intron Length:

1469

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

CAATCCTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

AATACATCAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.4

26.8

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

73.1

0.52

0.9

66.1

35.2

Minor 5ss

29.7

-2.3

3.3

37.8

Minor BPS

49.1

-0

1.8

60.94

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019061

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024001

77552481 - 77572038

19558