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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_77572039_77572955_R

Intron Information:

Intron Rank:
133448
Intron Class:
major
Intron Phase:
Intron Coordinates:
77572039 - 77572955
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCTTT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTGCATTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
76.8
34.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
93.5
0.98
0.7
92.4
26.2
Minor 5ss
44.4
-0.6
3.1
64.6
46.7
Minor BPS
52.8
0.08
2
69.59
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023106
77570349 - 77573119
2771